After installing the latest update, all of my gallery links turn up a page not found error.
http://www.9toes.com/zenphoto/
Anyone have some advice?
Well, mod_rewrite is not working on your site for some reason. Disable the option an things should function.
Having the .htaccess file in the zp-core folder will do no good. A properly configured one needs to be in the zenphoto folder. Did setup mention anything about the file? The one in the zp-core folder is just a template. And it does not have the period as in .htaccess.
The odd thing is that another gallery I have, that is using an older version of zenphoto (1.2.5_RC2), still works. So, mod_rewrite must be enabled on the server. Is it possible that it's the folder permissions?
(here's the other gallery: http://9toes.com/zenphoto2/)
Well, if I read your dialog correctly you have taken the htaccess file from the zp-core folder and placed it in the root folder of your installation. This is not proper.
I suggest you un-do anything you have done with htaccess or .htaccess, upload the files named setup*.php if you removed them, and then re-run setup paying close attention to what it tells you.